Computational Methods for Protein Dynamics and Function
About
Proteins are the workhorses of the cell and their atomistic and molecular dynamics are at the core of their ability to perform biological functions. We have developed novel computational methods to investigate allosteric regulation, and to analyse protein-protein interfaces and networks.
Research papers
- Teletin, M., Czibula, G., Bocicor, M-I., Albert, S., Pandini, A. (2018) ''. Lecture Notes in Computer Science, 11140 pp. 79 - 89. ISSN: 0302-9743
- Tiberti, M., Pandini, A., Fraternali, F., Fornili, A. (2017) ''. Bioinformatics, Volume 34, Issue 2, pp. 207–214. ISSN: 1367-4803
- Pandini, A., Fornili, A. (2016) ''. Journal of Chemical Theory and Computation (2016), 12, 3, 1368-1379. ISSN: 1549-9618, 1549-9626
- Chung, SS., Pandini, A., Annibale, A., Coolen, ACC., Thomas, NSB., Fraternali, F. (2015) ''. Scientific Reports volume 5, pp. 8540. ISSN: 2045-2322
- Pandini, A., Fornili, A., Fraternali, F., Kleinjung, J. (2013) ''. Bioinformatics, 29:16, pp. 2053 - 2055. ISSN: 1367-4803
- Pandini, A., Fornili, A., Fraternali, F., Kleinjung, J. (2012) ''. FASEB Journal, 26:2, pp. 868 - 881. ISSN: 0892-6638
- Fraccalvieri, D., Pandini, A., Stella, F., Bonati, L. (2011) ''. BMC Bioinformatics, 12:158. ISSN: 1471-2105
- Bordogna, A., Pandini, A., Bonati, L. (2011) ''. Journal of Computational Chemistry, 32 (1): 81 - 98. ISSN: 0192-8651, 1096-987X
- Pandini, A., Fornili, A., Kleinjung, J. (2010). 'Structural alphabets derived from attractors in conformational space'. BMC Bioinformatics, 11. ISSN: 1471-2105
- Pandini, A., Mauri, G., Bordogna, A., Bonati, L. (2007) ''. Protein Engineering, Design and Selection, 20:6, pp. 285 - 299. ISSN: 1741-0126